原著論文 / Publication
Atsuya Nishiyama論文名をクリックすると掲載論文を見ることが出来ます。
2025年 (令和7年)
- Shikimachi R, Matsuzawa S, Onoda H, Konuma T, Yamagata A, Shirouzu M, Yamaguchi K, Arita K*.
Structural basis for E3 ubiquitin ligase UHRF1 binding to nucleosome core particle and histone H3 ubiquitination.
J Biol Chem. 301, 110894, 2025. doi: 10.1016/j.jbc.2025.110894. (プレスリリースはこちら） - Sugimoto H., Kawase M, Ichiyanagi K.*
DNA methylation dictates histone modifications in developing male germ cells in the mouse.
Nucleic Acids Research, 53: gkaf1240, 2025. doi.org/10.1093/nar/gkaf1240 (プレスリリースはこちら） - Kikuchi A, Nishiyama A , Chiba Y, Nakanishi M, To TK, Arita K*.
Cryo-EM reveals evolutionarily conserved and distinct structural features of plant CG maintenance methyltransferase MET1.
Nature Communications, 16:8524, 2025. doi.org/10.1038/s41467-025-63765-9 (プレスリリースはこちら、横浜市大HPによる特集はこちら） - Fukuda K, Shimura C, Shinkai Y*
H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D genome integrity.
Genome Research, online ahead of print, 2025. doi:10.1101/gr.280732.125 (プレスリリースはこちら） - Kondo T, Ito S, Takano J, Han Y‑W, Endo T, Kondo K, Shibata M, Kawashima Y, Sugishita H, Harachi M, Sharif J, Seita J, Ohara O, Nakayama M, Koseki H*
SKP1A bound to Polycomb‑silenced genes mediates degradation of PRC2 and preconditions their activation.
Molecular Cell, 85(17), 3306-3320, 2025. doi:10.1016/j.molcel.2025.08.004 - Niwa T, Uno Y, Ohishi Y, Kadota M, Aburatani N, Kiyatake I, Katooka D, Yorozu M, Tsuzuki N, Toyoda A, Takagi W, Nakamura M, Kuraku S*
Sharks and rays have the oldest vertebrate sex chromosome with unique sex determination mechanisms.
Proceedings of the National Academy of Sciences of the United States of America, 122(30):e2513676122, 2025. doi.org/10.1073/pnas.25136761 - Nakamura N, Yoshimi S, Kikuchi A, Onoda H, Kori S, Nakanishi M, Nishiyama A, Arita K*.
Structures of USP7 in active and inactive states bound to DNMT1 revealed by cryo-EM.
Structure 33, 1-9, 2025 doi.org/10.1016/j.str.2025.06.005（プレスリリースはこちら） - Yamasaki YY*, Toyoda A, Kadota M, Kuraku S, Kitano J*
3D Genome Constrains Breakpoints of Inversions That Can Act as Barriers to Gene Flow in the Stickleback.
Molecular Ecology, 2025 (e17814). doi:10.1111/mec.17814 (紹介記事はこちら） - Kitao K*., Ichiyanagi K, Nakagawa S*. Birth of protein-coding exons by ancient domestication of LINE-1 retrotransposon.
Genome Research, 35:1287-1300, 2025 May 8, doi:10.1101/gr.280007.124（紹介記事はこちら） - Fukuda K*, Shimura C, Shinkai Y*. H3K27me3 and the PRC1-H2AK119ub pathway cooperatively maintain heterochromatin and transcriptional silencing after the loss of H3K9 methylation. Epigenetics Chromatin 2025 May 2;18(1):26. doi: 10.1186/s13072-025-00589-3.
